STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_3615PFAM: integrase family protein; KEGG: eca:ECA3415 site-specific tyrosine recombinase XerC; Belongs to the 'phage' integrase family. (638 aa)    
Predicted Functional Partners:
Namu_3616
Hypothetical protein.
       0.773
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.741
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.640
Namu_3611
PFAM: integrase domain protein SAM domain protein; integrase family protein; KEGG: avn:Avin_39510 site-specific tyrosine recombinase.
 
     0.594
Namu_1364
KEGG: acp:A2cp1_0258 phosphoribosyltransferase.
   
    0.593
Namu_1393
PFAM: protein of unknown function DUF159; KEGG: tmz:Tmz1t_2344 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
   
    0.548
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
   
    0.548
Namu_1215
PFAM: integrase family protein; KEGG: abo:ABO_1354 transposon protein A; Belongs to the 'phage' integrase family.
 
     0.498
Namu_3044
PFAM: integrase family protein; KEGG: abo:ABO_1354 transposon protein A.
 
     0.498
Namu_3469
PFAM: integrase family protein; KEGG: abo:ABO_1354 transposon protein A.
 
     0.498
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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