Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Namu_1383 | Namu_3784 | Namu_1383 | Namu_3784 | GTPase EngC; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | 0.456 |
Namu_1459 | Namu_3784 | Namu_1459 | Namu_3784 | PFAM: amino acid-binding ACT domain protein. | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | 0.445 |
Namu_3380 | Namu_3784 | Namu_3380 | Namu_3784 | (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | 0.455 |
Namu_3380 | Namu_3785 | Namu_3380 | Namu_3785 | (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.411 |
Namu_3783 | Namu_3784 | Namu_3783 | Namu_3784 | KEGG: hypothetical protein LOC612736. | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | 0.559 |
Namu_3784 | Namu_1383 | Namu_3784 | Namu_1383 | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | GTPase EngC; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.456 |
Namu_3784 | Namu_1459 | Namu_3784 | Namu_1459 | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | PFAM: amino acid-binding ACT domain protein. | 0.445 |
Namu_3784 | Namu_3380 | Namu_3784 | Namu_3380 | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.455 |
Namu_3784 | Namu_3783 | Namu_3784 | Namu_3783 | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | KEGG: hypothetical protein LOC612736. | 0.559 |
Namu_3784 | Namu_3785 | Namu_3784 | Namu_3785 | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.452 |
Namu_3784 | rny | Namu_3784 | Namu_3992 | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | RNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. | 0.484 |
Namu_3785 | Namu_3380 | Namu_3785 | Namu_3380 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.411 |
Namu_3785 | Namu_3784 | Namu_3785 | Namu_3784 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | 0.452 |
rny | Namu_3784 | Namu_3992 | Namu_3784 | RNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. | TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: nmc:NMC1823 D-tyrosyl-tRNA deacylase. | 0.484 |