STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_3967PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: ara:Arad_8187 aldolase protein. (281 aa)    
Predicted Functional Partners:
Namu_3968
PFAM: oxidoreductase domain protein; KEGG: rlt:Rleg2_0266 oxidoreductase domain protein.
 
     0.947
Namu_3966
PFAM: PfkB domain protein; KEGG: hypothetical protein.
 
  
 0.674
Namu_3965
KEGG: ecc:c4013 hypothetical protein.
 
   
 0.611
Namu_4915
TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase family 20; trehalose- phosphatase; KEGG: scl:sce3268 Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
   
    0.593
Namu_3971
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: avi:Avi_5339 ABC transporter substrate binding protein (ribose).
 
  
 0.583
Namu_3969
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: smd:Smed_0345 ABC transporter related.
 
  
 0.566
Namu_3973
PFAM: carbohydrate kinase FGGY; KEGG: ecf:ECH74115_4826 carbohydrate kinase, FGGY family.
 
  
 0.502
Namu_3974
PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: mlo:mlr3411 tagatose-1,6-bisphosphate aldolase.
  
   
 0.470
Namu_3970
PFAM: inner-membrane translocator; KEGG: smd:Smed_0344 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.445
Namu_1629
PFAM: Catalase domain protein; KEGG: abo:ABO_1845 catalase.
   
    0.405
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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