STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_4153KEGG: sat:SYN_01763 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (222 aa)    
Predicted Functional Partners:
Namu_3348
PFAM: Transketolase domain protein; KEGG: dac:Daci_0728 transketolase domain-containing protein.
 
 0.995
Namu_2262
Transketolase; KEGG: met:M446_3738 transketolase; TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; Belongs to the transketolase family.
 0.981
Namu_4785
Transketolase; KEGG: met:M446_3738 transketolase; TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; Belongs to the transketolase family.
 0.981
Namu_2187
KEGG: ccs:CCNA_02388 ribose 5-phosphate isomerase; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase.
  
 0.945
Namu_3347
PFAM: Transketolase central region; Transketolase domain protein; KEGG: pfo:Pfl01_2718 transketolase subunit B.
 
 
 0.940
Namu_4562
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.936
Namu_4789
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.936
Namu_0829
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: tau:Tola_0290 sugar-phosphate isomerase, RpiB/LacA/LacB family.
 
 
 0.934
Namu_0881
TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: hypothetical protein; K01808 ribose 5- phosphate isomerase B.
 
 
 0.933
Namu_2335
PFAM: Ribose/galactose isomerase; KEGG: ribose 5-phosphate isomerase; K01808 ribose 5-phosphate isomerase B.
 
 
 0.932
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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