STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_43074Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (108 aa)    
Predicted Functional Partners:
Namu_5378
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: eba:ebA3149 2-oxoglutarate ferredoxin oxidoreductase alpha subunit.
  
  
 0.880
Namu_4306
PFAM: aminotransferase class I and II; KEGG: afw:Anae109_3944 aminotransferase class I and II.
    
 0.783
Namu_0992
PFAM: fatty acid desaturase type 2; KEGG: Os04g0379900; hypothetical protein.
   
  
 0.670
Namu_1347
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_3296 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.666
Namu_0330
KEGG: acp:A2cp1_3438 ferredoxin--NADP(+) reductase.
 
 
 0.662
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
  
 0.631
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.631
Namu_2341
PFAM: Lactate/malate dehydrogenase; KEGG: mpt:Mpe_B0497 malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily.
  
  
 0.631
Namu_4974
TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: hypothetical protein.
   
    0.601
Namu_4308
KEGG: bte:BTH_I2057 hypothetical protein.
       0.516
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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