STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_4425PFAM: Ppx/GppA phosphatase; KEGG: ade:Adeh_0658 Ppx/GppA phosphatase. (322 aa)    
Predicted Functional Partners:
Namu_3380
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
 
 0.940
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.871
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
 
 
    0.657
Namu_4424
PFAM: protein of unknown function DUF1112; KEGG: sml:Smlt0986 putative transmembrane protein.
       0.560
Namu_4426
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: pzu:PHZ_p0173 acyl-CoA dehydrogenase.
       0.535
Namu_3763
PFAM: ROK family protein; KEGG: asa:ASA_3376 ROK family protein.
     
 0.497
Namu_3398
PFAM: protein of unknown function DUF28; KEGG: dol:Dole_0371 hypothetical protein.
     
 0.495
Namu_4120
PFAM: protein of unknown function DUF344; KEGG: gur:Gura_2647 hypothetical protein.
 
  
 0.469
Namu_3897
PFAM: protein of unknown function DUF344; KEGG: rsh:Rsph17029_2425 hypothetical protein.
 
  
 0.462
Namu_1708
PFAM: protein of unknown function DUF344; KEGG: aha:AHA_1671 polyphosphate kinase 2.
 
  
 0.460
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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