Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
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Coexpression
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Namu_4545
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_6417 formyl-CoA transferase; Belongs to the CoA-transferase III family. (407 aa)
Predicted Functional Partners:
Namu_4544
PFAM: Aldehyde Dehydrogenase; KEGG: bbr:BB1068 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
0.540
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431 Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233