STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_4680PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ara:Arad_12141 transcriptional regulator, LacI (ribose operon repressor) family. (331 aa)    
Predicted Functional Partners:
Namu_0309
TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PTS system, glucose subfamily, IIA subunit; phosphocarrier, HPr family; PFAM: PEP-utilizing protein; sugar-specific permease EIIA 1 domain; PEP-utilising protein domain protein; PEP-utilising protein mobile region; phosphoryl transfer system HPr; KEGG: cvi:CV_0980 phosphoenolpyruvate-protein phosphotransferase.
   
 
 0.666
Namu_3072
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
    
 
 0.620
Namu_4678
PFAM: amino acid permease-associated region; KEGG: ppf:Pput_5206 amino acid permease-associated region.
       0.470
Namu_4679
PFAM: UspA domain protein; KEGG: rfr:Rfer_1666 hypothetical protein.
       0.470
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.