STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_5061PFAM: Abortive infection protein. (247 aa)    
Predicted Functional Partners:
Namu_5060
Hypothetical protein.
 
     0.841
Namu_2117
Hypothetical protein.
  
     0.686
Namu_0150
Hypothetical protein.
  
     0.663
Namu_3106
KEGG: mxa:MXAN_1376 hypothetical protein.
  
     0.626
Namu_3229
KEGG: Hypothetical protein CBG04648.
  
     0.559
Namu_1024
PFAM: Cna B domain protein; KEGG: Muc19; mucin 19.
 
     0.550
Namu_0390
KEGG: sme:SM_b21421 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor.
  
     0.534
Namu_1053
Hypothetical protein; KEGG: GK23126 gene product from transcript GK23126- RA.
  
     0.522
Namu_4001
Hypothetical protein; KEGG: GH10507 gene product from transcript GH10507- RA.
  
     0.522
Namu_0189
KEGG: scl:sce2214 alpha/beta family hydrolase.
  
     0.518
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.