STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Namu_5286PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: mlo:mll9045 transposase. (412 aa)    
Predicted Functional Partners:
Namu_2622
PFAM: transposase IS4 family protein; KEGG: rhi:NGR_b16380 putative transposon-related protein.
 
     0.549
Namu_5288
PFAM: protein of unknown function DUF182; YHS domain protein; SMART: TRASH domain protein; KEGG: sil:SPO2394 carbon monoxide dehydrogenase F protein.
 
     0.531
Namu_5287
TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: aeh:Mlg_1564 carbon monoxide dehydrogenase, large subunit apoprotein.
       0.465
Namu_5289
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rhi:NGR_c15240 putative ATPase, AAA family.
       0.465
Namu_5290
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: rsq:Rsph17025_0328 VWA containing CoxE family protein.
       0.465
Namu_3663
Hypothetical protein; KEGG: xac:XACb0068 Tn5045 transposase.
  
     0.440
Namu_2661
KEGG: hypothetical protein LOC758554.
  
     0.412
Your Current Organism:
Nakamurella multipartita
NCBI taxonomy Id: 479431
Other names: N. multipartita DSM 44233, Nakamurella multipartita DSM 44233, Nakamurella multipartita str. DSM 44233, Nakamurella multipartita strain DSM 44233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.