STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_0097Hypothetical protein. (407 aa)    
Predicted Functional Partners:
Sros_0096
KEGG: dia:Dtpsy_1254 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
       0.779
Sros_8821
Hypothetical protein; KEGG: mag:amb4019 methyltransferase.
  
  
 0.567
Sros_0098
KEGG: aba:Acid345_4389 transcriptional regulator, PadR family.
       0.510
Sros_0099
Hypothetical protein.
       0.510
Sros_0095
Hypothetical protein.
       0.487
rlpA
Lipoprotein-like protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.401
Sros_7748
Hypothetical protein.
  
 
 0.401
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.