STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_0287KEGG: xau:Xaut_3687 hypothetical protein. (356 aa)    
Predicted Functional Partners:
Sros_0288
Hypothetical protein.
       0.785
Sros_3239
KEGG: rce:RC1_0811 hypothetical protein.
 
     0.690
Sros_3949
Superfamily I DNA and RNA helicase and helicase subunits-like protein; KEGG: sml:Smlt2488 hypothetical protein.
  
    0.678
Sros_1053
Membrane protein-like protein; KEGG: scl:sce7388 hypothetical protein.
  
     0.665
Sros_3420
KEGG: nar:Saro_1471 TetR family transcriptional regulator.
  
     0.613
Sros_3421
Putative transcriptional regulator, TetR family; KEGG: bmj:BMULJ_04575 transcriptional regulatory protein.
  
     0.602
Sros_5671
Site-specific recombinase XerD-like protein; KEGG: pna:Pnap_4798 phage integrase family protein; Belongs to the 'phage' integrase family.
  
    0.567
Sros_0286
Hypothetical protein.
       0.551
Sros_3234
KEGG: mxa:MXAN_2890 hypothetical protein.
 
     0.549
Sros_6679
Hypothetical protein; KEGG: scl:sce2632 calcineurin-like phosphoesterase family protein.
  
     0.549
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.