STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_0322KEGG: mxa:MXAN_7058 ornithine cyclodeaminase/mu- crystallin family protein. (317 aa)    
Predicted Functional Partners:
Sros_1520
KEGG: vha:VIBHAR_01795 alanine dehydrogenase; Belongs to the AlaDH/PNT family.
    
  0.902
Sros_2565
KEGG: pde:Pden_1729 alanine dehydrogenase; Belongs to the AlaDH/PNT family.
    
  0.902
Sros_1141
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.820
Sros_3754
KEGG: mno:Mnod_3998 ornithine cyclodeaminase/mu- crystallin.
  
     0.681
Sros_0323
Hypothetical protein; KEGG: mex:Mext_4563 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
       0.634
Sros_5997
KEGG: slo:Shew_2361 proline racemase; Belongs to the proline racemase family.
 
   
 0.527
Sros_3503
KEGG: bar:GBAA2834 proline racemase, putative; Belongs to the proline racemase family.
 
   
 0.479
Sros_6004
4-hydroxyproline epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Displays no proline racemase activity.
 
   
 0.473
Sros_0324
Transcriptional regulator protein-like protein; KEGG: ara:Arad_0713 hypothetical protein.
       0.438
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.