STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_0637KEGG: bra:BRADO4834 putative deacetylase. (225 aa)    
Predicted Functional Partners:
Sros_0635
KEGG: rce:RC1_3997 methyltransferase, putative.
 
     0.961
Sros_0636
KEGG: rce:RC1_3996 glucose-1-phosphate cytidylyltransferase, putative.
 
    0.961
Sros_0638
KEGG: mag:amb0123 nucleoside-diphosphate-sugar epimerase.
 
    0.961
Sros_0639
KEGG: met:M446_4986 hypothetical protein.
 
     0.959
Sros_0642
Glycosyltransferase involved in cell wall biogenesis-like protein; KEGG: dol:Dole_1967 glycosyl transferase family protein.
 
   
 0.858
Sros_0640
KEGG: bra:BRADO4833 hypothetical protein.
       0.780
Sros_0641
KEGG: rce:RC1_3989 polysaccharide biosynthesis protein, putative.
 
     0.704
Sros_0634
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
       0.589
Sros_0654
KEGG: mno:Mnod_5881 glycosyl transferase group 1.
 
  
 0.473
Sros_4411
Hypothetical protein.
  
   
 0.463
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.