STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_0737KEGG: rpc:RPC_0244 beta-Ig-H3/fasciclin. (212 aa)    
Predicted Functional Partners:
nuoD
NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
    
 
 0.884
nuoD-2
NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
    
 
 0.884
Sros_0738
Sulfite oxidase-like protein; KEGG: mlo:mll2597 sulfite oxidase.
 
     0.741
Sros_3290
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: avi:Avi_7564 ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.531
Sros_2920
KEGG: aav:Aave_3572 hypothetical protein.
 
    0.513
Sros_3291
KEGG: sus:Acid_7861 hypothetical protein.
 
   
 0.486
Sros_0736
Hypothetical protein; KEGG: dar:Daro_0364 ABC transporter.
       0.422
Sros_0739
KEGG: hypothetical protein.
       0.413
Sros_1613
KEGG: rce:RC1_2026 deoxyribodipyrimidine photolyase family protein; Belongs to the DNA photolyase family.
 
  
 0.409
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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