STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_1007KEGG: lpf:lpl1388 hypothetical protein. (415 aa)    
Predicted Functional Partners:
Sros_8013
KEGG: sus:Acid_2815 major facilitator transporter.
  
     0.740
Sros_1861
KEGG: sus:Acid_2815 major facilitator transporter.
  
     0.735
Sros_6664
KEGG: sus:Acid_2815 major facilitator transporter.
  
     0.704
Sros_4089
KEGG: sus:Acid_2815 major facilitator transporter.
  
     0.660
Sros_6746
KEGG: bpm:BURPS1710b_A0719 hypothetical protein.
  
     0.656
Sros_9059
Hypothetical protein; KEGG: rle:RL3147 putative transmembrane transporter.
  
     0.644
pdxH
Pyridoxal 5'-phosphate synthase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.601
Sros_0534
Hypothetical protein; KEGG: yen:YE2035 putative membrane transport protein.
  
     0.513
Sros_1008
KEGG: sus:Acid_2178 DtxR family iron dependent repressor.
     
 0.496
Sros_1005
KEGG: mlo:mll3842 citrate synthase 2; Belongs to the citrate synthase family.
  
    0.417
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.