STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_1169KEGG: xac:XAC1388 hypothetical protein. (277 aa)    
Predicted Functional Partners:
Sros_1168
KEGG: mmr:Mmar10_2631 ABC transporter related.
  
 
 0.834
Sros_1170
KEGG: tmz:Tmz1t_0122 protein of unknown function DUF1228.
       0.833
Sros_1171
Hypothetical protein; KEGG: rsk:RSKD131_2821 transport system permease protein precursor.
       0.799
Sros_1172
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rde:RD1_3999 RNA polymerase ECF-type sigma factor, putative; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.789
Sros_2594
Hypothetical protein; KEGG: swi:Swit_2804 membrane-like protein.
  
 
 0.520
Sros_1173
KEGG: vei:Veis_2018 FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.473
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.