STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_1292KEGG: bha:BH0484 transmembrane lipoprotein. (340 aa)    
Predicted Functional Partners:
Sros_1293
ABC-type sugar transport system periplasmic component-like protein; KEGG: bsu:BSU30160 hypothetical protein.
 
 0.995
Sros_1291
KEGG: bsu:BSU30170 hypothetical protein.
 
 0.992
Sros_1295
KEGG: bha:BH1908 glucan 1,4-beta-glucosidase.
 
     0.720
Sros_4986
KEGG: spe:Spro_2573 binding-protein-dependent transport systems inner membrane component.
 
 
 0.720
Sros_5407
KEGG: xfm:Xfasm12_1605 ABC transporter sugar permease.
 
 
 0.719
Sros_2366
KEGG: jan:Jann_2586 binding-protein-dependent transport systems inner membrane component.
 
 
 0.687
Sros_7693
KEGG: rle:RL3845 putative transmembrane permease component of ABC transporter.
 
 
 0.686
Sros_5308
KEGG: jan:Jann_2586 binding-protein-dependent transport systems inner membrane component.
 
 
 0.676
Sros_3536
KEGG: sml:Smlt3250 putative sugar transporter, permease protein.
 
 
 0.675
Sros_3073
KEGG: cvi:CV_0260 sugar ABC transporter permease.
 
 
 0.663
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.