STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_1306KEGG: rso:RSc0652 secretion ATPase protein. (433 aa)    
Predicted Functional Partners:
Sros_1307
Hypothetical protein; KEGG: csa:Csal_1660 type II secretion system protein.
 
  
 0.956
Sros_1308
Hypothetical protein; KEGG: vsp:VS_0024 putative bacterial type II secretion system protein, TadC-like protein.
 
  
 0.956
Sros_1305
Hypothetical protein.
 
  
 0.941
Sros_1310
KEGG: ade:Adeh_2829 TadE-like.
 
  
 0.926
Sros_1311
KEGG: dvl:Dvul_0051 TadE family protein.
 
  
 0.860
Sros_1304
Hypothetical protein.
  
    0.805
Sros_1313
Hypothetical protein; KEGG: scl:sce7264 ribonuclease G.
 
     0.713
Sros_0481
Flp pilus assembly protein TadB-like protein; KEGG: bch:Bcen2424_1524 type II secretion system protein.
  
  
 0.645
Sros_0482
Hypothetical protein; KEGG: dsh:Dshi_1125 type II secretion system protein.
  
  
 0.645
Sros_1309
Hypothetical protein.
       0.633
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.