STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_1397Membrane protein/domain-like protein; KEGG: smt:Smal_3843 RDD domain containing protein. (343 aa)    
Predicted Functional Partners:
Sros_1404
Membrane protein-like protein; KEGG: mxa:MXAN_3115 hypothetical protein.
 
    0.911
Sros_1407
KEGG: mxa:MXAN_4679 hypothetical protein.
 
    0.797
Sros_1411
KEGG: scl:sce8934 hypothetical protein.
 
     0.784
Sros_1409
KEGG: scl:sce1390 hypothetical protein.
 
    0.783
Sros_1410
KEGG: bha:BH0729 hypothetical protein.
 
    0.783
Sros_1408
KEGG: hne:HNE_1205 AAA family ATPase.
 
    0.500
Sros_0946
KEGG: rpd:RPD_4397 hypothetical protein.
  
     0.445
Sros_1398
KEGG: pen:PSEEN1955 ribose operon repressor RbsR.
       0.444
rbsA
ABC transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
       0.444
Sros_1400
KEGG: cvi:CV_3017 D-ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.444
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.