STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_2471KEGG: apl:APL_0848 putative ABC transporter periplasmic binding protein. (530 aa)    
Predicted Functional Partners:
Sros_2473
KEGG: apl:APL_0850 ABC transporter, ATP- binding/permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.959
Sros_2472
KEGG: apl:APL_0849 inner membrane ABC transporter permease.
   0.946
Sros_2474
KEGG: azc:AZC_3044 peptide ABC transporter ATP- binding protein; Belongs to the ABC transporter superfamily.
 
    0.918
Sros_2475
KEGG: rle:pRL120328 putative dihydropicolinate synthase family protein; Belongs to the DapA family.
 
     0.908
Sros_2470
Transcriptional regulator, GntR family; KEGG: pmu:PM1764 hypothetical protein.
 
     0.833
nanE
N-acylglucosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
     0.795
Sros_2476
KEGG: ara:Arad_9637 transcriptional regulator protein.
 
     0.754
Sros_2385
KEGG: avi:Avi_7202 ABC transporter membrane spanning protein (dipeptide).
 
 0.620
Sros_4850
KEGG: acr:Acry_2076 binding-protein-dependent transport systems inner membrane component.
 
 
 0.586
Sros_6177
KEGG: pde:Pden_1669 binding-protein-dependent transport systems inner membrane component.
 
 
 0.586
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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