STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_3215Sphingosine kinase-like protein; KEGG: mlo:mll9677 hypothetical protein. (506 aa)    
Predicted Functional Partners:
Sros_4434
KEGG: cak:Caul_2304 fatty acid hydroxylase.
   
 
 0.873
Sros_8963
KEGG: avi:Avi_7552 hypothetical protein.
   
 0.768
Sros_3581
Hypothetical protein.
   
 0.767
Sros_7674
Hypothetical protein; KEGG: ank:AnaeK_1845 serine/threonine protein kinase.
   
 0.767
Sros_7756
Hypothetical protein.
    
 0.767
Sros_8815
Polyketide synthase modules and related protein- like protein; KEGG: xau:Xaut_1008 beta-ketoacyl synthase.
   
 
 0.603
Sros_3385
Hypothetical protein; KEGG: Muc19; mucin 19.
  
    0.565
Sros_3213
KEGG: zmo:ZMO1385 hypothetical protein.
       0.559
Sros_3214
KEGG: dac:Daci_0764 hypothetical protein.
       0.559
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.539
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.