STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_3402KEGG: hypothetical protein. (242 aa)    
Predicted Functional Partners:
Sros_3774
KEGG: scl:sce3880 (2,3-dihydroxybenzoyl)adenylate synthase.
   
  
 0.780
Sros_2510
Hypothetical protein.
  
     0.735
Sros_1555
KEGG: ret:RHE_PC00178 hypothetical protein.
  
     0.731
Sros_6403
Hypothetical protein; KEGG: GF21951 gene product from transcript GF21951- RA.
 
     0.724
Sros_9294
Transcriptional regulator, SARP family; KEGG: scl:sce5225 protein kinase.
  
     0.703
rpsD-2
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
     0.687
Sros_2619
KEGG: cak:Caul_0821 hypothetical protein.
  
     0.683
Sros_8441
Hypothetical protein; KEGG: pen:PSEEN0303 RNA polymerase factor sigma-32.
  
     0.665
Sros_1762
KEGG: aba:Acid345_1276 hypothetical protein.
  
     0.634
Sros_1227
Hypothetical protein; KEGG: predicted gene, 100042292.
  
     0.633
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.