STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_3479KEGG: bid:Bind_3241 ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa)    
Predicted Functional Partners:
Sros_5026
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bja:blr4028 putative RNA polymerase; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.801
Sros_5961
KEGG: afw:Anae109_2126 ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.798
Sros_0765
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bra:BRADO7108 putative RNA polymerase sigma factor protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.791
Sros_8920
KEGG: afw:Anae109_0839 ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.782
Sros_1062
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rfr:Rfer_4136 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.771
Sros_0335
KEGG: afw:Anae109_3622 ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.768
Sros_0193
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bcj:BCAM1661 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.748
Sros_1156
KEGG: rpt:Rpal_2016 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.744
Sros_8781
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: jan:Jann_3565 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.737
Sros_0980
KEGG: sus:Acid_2537 ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.732
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.