STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_3571KEGG: met:M446_4689 ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)    
Predicted Functional Partners:
Sros_3572
Hypothetical protein.
       0.776
Sros_9216
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bcj:BCAM1661 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.738
Sros_0765
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bra:BRADO7108 putative RNA polymerase sigma factor protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.638
Sros_5961
KEGG: afw:Anae109_2126 ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.635
Sros_0869
KEGG: xau:Xaut_2021 ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.613
Sros_1215
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: azo:azo2564 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.606
Sros_0980
KEGG: sus:Acid_2537 ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.605
Sros_8781
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: jan:Jann_3565 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.603
Sros_9374
KEGG: mgm:Mmc1_3544 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.566
Sros_2247
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bbr:BB1638 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.561
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.