STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfiDeoxyribonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. (223 aa)    
Predicted Functional Partners:
Sros_3898
Hypothetical protein; KEGG: F-box domain and ankyrin repeat protein.
 
     0.741
Sros_3897
Hypothetical protein.
       0.690
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
    0.572
Sros_3900
Uncharacterized Fe-S protein-like protein; KEGG: scl:sce6725 sulfur-carrier protein.
       0.566
Sros_3901
KEGG: mgm:Mmc1_2182 protein of unknown function DUF77.
       0.504
Sros_7452
KEGG: acp:A2cp1_3352 protein of unknown function DUF82.
 
     0.482
Sros_0081
KEGG: pap:PSPA7_1455 hypothetical protein.
  
     0.420
Sros_3896
KEGG: bac:BamMC406_4411 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.405
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
  
 0.403
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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