STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_4390KEGG: rme:Rmet_4860 peptidase S45, penicillin amidase. (773 aa)    
Predicted Functional Partners:
Sros_4389
KEGG: ajs:Ajs_3114 hypothetical protein.
 
     0.824
Sros_4388
KEGG: ent:Ent638_1632 lipoprotein transporter ATP- binding subunit.
  
    0.779
Sros_4387
KEGG: scl:sce6005 transcriptional regulator.
       0.773
Sros_4386
Hypothetical protein.
       0.539
Sros_3599
KEGG: hypothetical protein.
  
     0.459
Sros_3463
L-lysine 6-monooxygenase (NADPH); KEGG: bur:Bcep18194_A4789 lysine/ornithine N- monooxygenase.
  
  
 0.429
Sros_0283
KEGG: bha:BH1303 chitin-binding protein.
  
     0.415
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.