STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_4492KEGG: ret:RHE_CH01323 hypothetical protein. (122 aa)    
Predicted Functional Partners:
Sros_3462
KEGG: scl:sce5149 ECF subfamily RNA polymerase sigma-70 factor.
 
     0.781
Sros_5459
KEGG: mxa:MXAN_5410 RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.781
Sros_4397
KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.
 
     0.780
Sros_5547
KEGG: scl:sce5149 ECF subfamily RNA polymerase sigma-70 factor.
 
     0.780
Sros_4226
KEGG: scl:sce6417 ECF subfamily RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
 
     0.779
Sros_5825
KEGG: ank:AnaeK_3587 putative RNA polymerase, sigma- 24 subunit, ECF subfamily; Belongs to the sigma-70 factor family.
 
     0.779
Sros_4396
KEGG: pzu:PHZ_c0570 hypothetical protein.
  
     0.773
Sros_4493
Bifunctional deaminase-reductase-like protein; KEGG: rfr:Rfer_2843 bifunctional deaminase- reductase-like.
       0.510
Sros_4491
KEGG: acp:A2cp1_2930 3-oxoacyl-(acyl-carrier- protein) synthase 2; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.400
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.