STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_4955KEGG: rpi:Rpic_4094 transcriptional regulator, GntR family. (248 aa)    
Predicted Functional Partners:
trpA-2
Tryptophan synthase; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.779
trpB-2
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.778
Sros_2096
KEGG: xau:Xaut_1317 GntR family transcriptional regulator.
  
     0.774
Sros_3175
KEGG: bbr:BB4084 GntR family transcriptional regulator.
  
     0.774
Sros_0700
KEGG: rpi:Rpic_2152 transcriptional regulator, GntR family.
  
     0.772
Sros_0718
KEGG: rpi:Rpic_2152 transcriptional regulator, GntR family.
  
     0.772
Sros_0154
KEGG: rpi:Rpic_4094 transcriptional regulator, GntR family.
  
     0.771
Sros_1841
Putative transcriptional regulator, GntR family; KEGG: efe:EFER_2374 DNA-binding transcriptional dual regulator, fatty-acyl-binding.
  
     0.767
Sros_6337
KEGG: ppg:PputGB1_0976 GntR domain-containing protein.
  
    0.618
Sros_0563
KEGG: rpi:Rpic_4094 transcriptional regulator, GntR family.
  
     0.535
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.