STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_5289KEGG: avi:Avi_7502 regulator protein PecM. (318 aa)    
Predicted Functional Partners:
Sros_4243
KEGG: cti:RALTA_A0035 putative transcriptional regulator, MarR family.
 
   
 0.777
Sros_5290
Hypothetical protein.
       0.773
Sros_2280
KEGG: atc:AGR_C_466 hypothetical protein.
 
   
 0.770
Sros_2316
KEGG: hch:HCH_06669 transcriptional regulator.
 
   
 0.768
Sros_5658
KEGG: cti:RALTA_A0035 putative transcriptional regulator, MarR family.
 
   
 0.758
Sros_8615
KEGG: cti:RALTA_A0035 putative transcriptional regulator, MarR family.
 
   
 0.756
Sros_5291
Hypothetical protein.
       0.538
Sros_7788
KEGG: gsu:GSU0574 hypothetical protein.
  
     0.500
Sros_8407
KEGG: bur:Bcep18194_A5670 hypothetical protein.
  
     0.492
Sros_5288
KEGG: spe:Spro_1381 major facilitator transporter.
       0.473
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.