STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_5308KEGG: jan:Jann_2586 binding-protein-dependent transport systems inner membrane component. (319 aa)    
Predicted Functional Partners:
Sros_5309
KEGG: scl:sce3058 sugar ABC transporter, permease protein.
   0.962
Sros_6516
KEGG: ret:RHE_PE00356 sugar ABC transporter, ATP- binding protein; Belongs to the ABC transporter superfamily.
 
 0.854
Sros_5821
KEGG: mca:MCA1942 sugar ABC transporter, permease protein.
 
 0.851
Sros_5408
Carbohydrate ABC transporter membrane protein 1, CUT1 family; KEGG: bsu:BSU32590 hypothetical protein.
 
 0.849
Sros_2365
KEGG: mca:MCA1942 sugar ABC transporter, permease protein.
 
 0.848
Sros_3074
KEGG: cvi:CV_0261 sugar ABC transporter permease protein.
 
 0.848
Sros_5739
KEGG: bra:BRADO6023 ABC transporter permease.
 
 0.848
Sros_8235
KEGG: mlo:mlr7001 ABC transporter, permease protein.
 
 0.848
Sros_3490
KEGG: mlo:mlr7224 sugar ABC transportor, ATP- binding protein; Belongs to the ABC transporter superfamily.
 
 0.847
Sros_2048
KEGG: vei:Veis_0945 binding-protein-dependent transport systems inner membrane component.
 
 
 0.846
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.