STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_5403KEGG: scl:sce7040 hypothetical protein. (192 aa)    
Predicted Functional Partners:
Sros_2975
WD40 repeatdomain-containing protein-like protein; KEGG: scl:sce3623 hypothetical protein.
   
 0.900
Sros_8815
Polyketide synthase modules and related protein- like protein; KEGG: xau:Xaut_1008 beta-ketoacyl synthase.
   
 0.894
Sros_7756
Hypothetical protein.
  
 0.890
Sros_2423
KEGG: mxa:MXAN_2798 polyketide/non-ribosomal peptide synthetase.
   
 0.889
Sros_5404
KEGG: scl:sce5223 DeoR family transcriptional regulator.
 
     0.733
Sros_6793
Carbonate dehydratase; KEGG: mxa:MXAN_4784 inorganic anion transporter, sulfate permease (SulP) family.
    
 
 0.573
Sros_2609
Hypothetical protein; KEGG: GH13373 gene product from transcript GH13373- RA.
    
 0.510
Protein
Protein; KEGG: predicted protein; K02183 calmodulin.
    
 0.510
arc
ATP-dependent 26S proteasome regulatory subunit- like protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.
    
 0.487
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.484
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.