STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_5600Hypothetical protein. (142 aa)    
Predicted Functional Partners:
Sros_7957
KEGG: cak:Caul_2456 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
  
  
 
0.911
Sros_3241
Heme oxygenase; KEGG: MGC80397 protein; K00510 heme oxygenase.
     
  0.900
Sros_5598
KEGG: oan:Oant_1885 precorrin-4 C11- methyltransferase; Belongs to the precorrin methyltransferase family.
       0.799
Sros_5599
KEGG: pmy:Pmen_4570 precorrin-6y C5,15- methyltransferase (decarboxylating), CbiE subunit.
       0.799
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.607
Sros_4541
Hypothetical protein.
  
     0.582
Sros_8570
Hypothetical protein.
  
     0.556
Sros_3380
KEGG: mch:Mchl_2413 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
    0.552
Sros_5424
KEGG: hypothetical protein.
  
     0.545
Sros_2643
KEGG: aba:Acid345_0055 hypothetical protein.
  
    0.518
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.