STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_5802KEGG: mch:Mchl_1435 putative dehydrogenase protein. (322 aa)    
Predicted Functional Partners:
Sros_1380
KEGG: swi:Swit_0414 LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.767
Sros_4162
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; KEGG: swi:Swit_0724 methylenetetrahydromethanopterin reductase.
  
     0.760
Sros_4541
Hypothetical protein.
  
   
 0.760
Sros_6623
KEGG: swi:Swit_1615 coenzyme F420-dependent N5 N10- methylene tetrahydromethanopterin reductase-like protein.
  
     0.745
Sros_7866
Hypothetical protein.
  
   
 0.733
Sros_5424
KEGG: hypothetical protein.
  
   
 0.720
Sros_7373
KEGG: pzu:PHZ_c2543 5,10- methylenetetrahydromethanopterin reductase.
  
     0.717
Sros_0086
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; KEGG: swi:Swit_0704 luciferase family protein.
  
     0.696
Sros_0833
Hypothetical protein.
  
   
 0.670
Sros_1973
KEGG: swi:Swit_2098 luciferase family protein.
  
     0.670
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.