STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_5967KEGG: acp:A2cp1_3542 peptidase U61 LD- carboxypeptidase A. (301 aa)    
Predicted Functional Partners:
Sros_8055
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bsu:BSU18350 penicillin-binding protein (D- alanyl-D-alanine carboxypeptidase).
 
  
 0.804
Sros_9179
D-alanyl-D-alanine carboxypeptidase (penicillin- binding protein 4)-like protein; KEGG: acp:A2cp1_3950 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
  
 0.734
Sros_5966
Hypothetical protein.
       0.648
Sros_5968
KEGG: scl:sce1864 hypothetical protein.
       0.554
Sros_9001
N-acetylmuramoyl-L-alanine amidase-like protein; KEGG: aba:Acid345_1153 N-acetylmuramoyl-L-alanine amidase.
    
 0.546
Sros_8120
D-aminopeptidase; KEGG: azc:AZC_2991 D-aminopeptidase.
 
    0.516
Sros_7279
Peptidoglycan glycosyltransferase; KEGG: sat:SYN_00551 cell elongation specific D,D- transpeptidase.
    
  0.506
Sros_5273
D-aminopeptidase; KEGG: azc:AZC_2991 D-aminopeptidase.
 
    0.481
Sros_5695
KEGG: bha:BH0674 hypothetical protein.
  
     0.430
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
      0.429
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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