STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbpA-2Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. (115 aa)    
Predicted Functional Partners:
Sros_6035
Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
     0.716
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
 
     0.710
Sros_6816
Zn-ribbon protein possibly nucleic acid-binding- like protein; KEGG: gbm:Gbem_0479 protein of unknown function DUF164.
  
     0.584
Sros_6722
Hypothetical protein.
  
     0.582
Sros_8432
KEGG: hypothetical protein.
  
     0.564
Sros_6017
KEGG: sus:Acid_5280 glucose-6-P dehydrogenase subunit-like protein.
  
     0.560
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
       0.540
pgk
KEGG: bsu:BSU33930 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
 
     0.540
Sros_8118
KEGG: bbr:BB1555 hypothetical protein.
  
     0.536
Sros_2678
KEGG: afw:Anae109_1530 response regulator receiver protein.
  
     0.530
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.