STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_6103KEGG: aba:Acid345_1901 beta-lactamase-like. (231 aa)    
Predicted Functional Partners:
Sros_1900
KEGG: aca:ACP_1943 metallo-beta-lactamase family protein.
  
 0.914
Sros_1224
KEGG: sal:Sala_2348 glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
  0.900
Sros_8805
Hypothetical protein; KEGG: gur:Gura_0655 glyoxalase/bleomycin resistance protein/dioxygenase.
     
  0.900
aspS-2
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
 
     0.857
hisS
Histidine--tRNA ligase; KEGG: noc:Noc_0902 histidyl-tRNA synthetase, class IIA.
  
    0.838
Sros_6104
Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family-like protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
    0.661
Sros_6105
KEGG: dia:Dtpsy_2041 hypothetical protein.
  
    0.606
Sros_2875
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
   
 0.491
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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