STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (493 aa)    
Predicted Functional Partners:
araB
Ribulokinase; KEGG: bsu:BSU28790 ribulokinase.
 
 0.999
Sros_6218
KEGG: aha:AHA_1901 L-ribulose-5-phosphate 4- epimerase.
 
 0.997
Sros_2485
KEGG: vei:Veis_3457 alpha-N-arabinofuranosidase.
 
 
 0.959
Sros_0430
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 
0.904
Sros_7708
KEGG: ppd:Ppro_2543 class II aldolase/adducin family protein.
 
  
 0.865
xylA
KEGG: aba:Acid345_0903 xylose isomerase; Belongs to the xylose isomerase family.
 
   
 0.847
Sros_6221
KEGG: rpi:Rpic_4097 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.758
Sros_6223
KEGG: rpi:Rpic_4095 periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.751
Sros_6220
KEGG: aav:Aave_2249 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.735
Sros_6222
KEGG: bja:blr3201 sugar ABC transporter ATP-binding protein.
 
  
 0.729
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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