STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_6270KEGG: atc:AGR_C_4482 putative tricarboxylic transport membrane protein. (342 aa)    
Predicted Functional Partners:
Sros_8068
KEGG: bja:blr3163 hypothetical protein.
 
  
 0.954
Sros_8067
KEGG: lch:Lcho_2568 hypothetical protein.
 
  
 0.953
Sros_8066
KEGG: bja:blr3161 hypothetical protein.
  
  
 
0.916
Sros_8064
KEGG: vvy:VV1604 response regulator of citrate/malate metabolism.
 
    0.615
glmS-2
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.527
Sros_6272
Hypothetical protein.
       0.520
Sros_1537
KEGG: bpt:Bpet4159 hypothetical protein.
  
   
 0.517
Sros_8065
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: bha:BH3839 two-component sensor histidine kinase.
 
    0.482
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.