STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_6828KEGG: acp:A2cp1_0068 protein of unknown function DUF6 transmembrane. (307 aa)    
Predicted Functional Partners:
Sros_6829
KEGG: afr:AFE_2323 hypothetical protein.
       0.505
Sros_6830
Oxidoreductase; KEGG: scl:sce0805 oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.505
Sros_3413
Spermidine synthase-like protein; KEGG: sus:Acid_3582 hypothetical protein.
  
  
 0.429
Sros_7375
Hypothetical protein; KEGG: aha:AHA_3487 ABC-type transport system, permease component.
  
     0.424
Sros_4441
KEGG: eba:c2A200 hypothetical protein.
 
   0.415
Sros_1077
Hypothetical protein.
  
 
   0.402
Sros_8846
KEGG: sus:Acid_6517 hypothetical protein.
 
    0.401
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.