STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_7184KEGG: swi:Swit_1944 TetR family transcriptional regulator. (190 aa)    
Predicted Functional Partners:
Sros_7185
KEGG: mxa:MXAN_1250 RibD domain protein.
 
     0.794
Sros_0724
KEGG: scl:sce1370 dihydrofolate reductase family protein.
 
     0.623
Sros_4096
KEGG: mxa:MXAN_1250 RibD domain protein.
 
     0.580
Sros_6140
Putative transcriptional regulator, PaaX family; KEGG: pap:PSPA7_0915 PaaX domain-containing protein, C-domain.
  
    0.575
Sros_3848
KEGG: scl:sce1370 dihydrofolate reductase family protein.
 
     0.550
Sros_6466
KEGG: scl:sce6114 hypothetical protein.
  
    0.534
Sros_7186
Hypothetical protein.
       0.524
Sros_5056
Putative transcriptional regulator, MerR family; KEGG: rso:RS05447 transcription regulator protein.
  
     0.517
Sros_0929
KEGG: sun:SUN_1004 hypothetical protein.
   
    0.481
Sros_4511
KEGG: pfl:PFL_3495 ABC transporter, ATP- binding/permease protein.
  
     0.474
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.