STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_7276KEGG: mch:Mchl_4932 apolipoprotein A1/A4/E. (475 aa)    
Predicted Functional Partners:
Sros_7275
Hypothetical protein; KEGG: ppw:PputW619_4843 aminoglycoside phosphotransferase.
 
     0.928
Sros_7274
KEGG: pca:Pcar_2585 Fe-S oxidoreductase.
       0.727
Sros_4031
Lantibiotic modifying protein-like protein; KEGG: sus:Acid_6416 lanthionine synthetase C family protein.
  
     0.725
Sros_7664
KEGG: hypothetical protein.
  
     0.724
Sros_3795
ATPase-like protein; KEGG: rle:pRL120769 putative transcriptional regulator.
  
     0.716
Sros_3413
Spermidine synthase-like protein; KEGG: sus:Acid_3582 hypothetical protein.
 
     0.668
Sros_8291
KEGG: sfu:Sfum_3153 hypothetical protein.
  
     0.645
Sros_1384
Hypothetical protein; KEGG: GK24882 gene product from transcript GK24882- RA.
  
     0.642
Sros_1159
Response regulator receiver protein; KEGG: sus:Acid_1272 two component LuxR family transcriptional regulator.
  
 
   0.630
Sros_0838
Periplasmic protease-like protein; KEGG: shn:Shewana3_0049 C-terminal processing peptidase-3.
 
     0.625
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.