STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_7566Hypothetical protein; KEGG: mca:MCA1493 cellulose-binding domain- containing protein. (173 aa)    
Predicted Functional Partners:
Sros_0936
Cellulose 1,4-beta-cellobiosidase; KEGG: hch:HCH_02465 RTX toxins and related Ca2+- binding protein.
 
   
 0.784
Sros_0934
KEGG: sde:Sde_0064 putative secreted beta- mannosidase.
 
     0.766
Sros_6890
KEGG: sde:Sde_2272 cellobiohydrolase A (1 4-beta- cellobiosidase A)-like; Belongs to the glycosyl hydrolase family 6.
 
   
 0.764
Sros_5296
Hypothetical protein; KEGG: mxa:MXAN_6008 chitinase, class II.
 
   
 0.761
Sros_5719
KEGG: hypothetical protein.
 
   
 0.727
Sros_8280
Cellulase; KEGG: scl:sce2234 cellulase.
 
   
 0.722
Sros_1212
KEGG: hypothetical protein.
  
   
 0.694
Sros_7565
Conserved hypothetical protein; KEGG: pap:PSPA7_4667 chitin-binding protein CbpD precursor.
 
   
0.660
Sros_8171
KEGG: cja:CJA_2611 endo-chitinase, putative, chi18D; Belongs to the glycosyl hydrolase 18 family.
 
   
 0.595
Sros_2264
Serine phosphatase RsbU regulator of sigma subunit-like protein; KEGG: aba:Acid345_2411 PAS/PAC sensor hybrid histidine kinase.
  
     0.583
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.