STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_7652RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ade:Adeh_1747 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (592 aa)    
Predicted Functional Partners:
Sros_3197
KEGG: sus:Acid_4290 hypothetical protein.
  
     0.673
Sros_1873
Hypothetical protein; KEGG: ank:AnaeK_1332 SNARE associated Golgi protein.
  
     0.600
Sros_1151
KEGG: hypothetical protein.
  
     0.530
Sros_6921
KEGG: sfu:Sfum_1091 WD-40 repeat protein.
  
    0.524
Sros_2619
KEGG: cak:Caul_0821 hypothetical protein.
  
     0.519
Sros_1128
Hypothetical protein; KEGG: Muc19; mucin 19.
  
 
 0.507
Sros_6920
KEGG: reu:Reut_A2011 hypothetical protein.
 
    0.483
Sros_1868
KEGG: spe:Spro_1402 hypothetical protein.
  
     0.482
Sros_6483
ATP-dependent Zn protease-like protein; KEGG: cell division protein FtsH; Belongs to the AAA ATPase family.
  
    0.478
Sros_8021
Hypothetical protein; KEGG: tgr:Tgr7_0547 peroxiredoxin-like protein.
  
    0.476
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.