STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_7797KEGG: aba:Acid345_1276 hypothetical protein. (278 aa)    
Predicted Functional Partners:
lysS
Lysyl-tRNA synthetase (class II)-like protein; KEGG: lysine--tRNA ligase class II, chloroplast or mitochondrial; K04567 lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
     0.648
Sros_7796
KEGG: pzu:PHZ_c1287 transcriptional regulator, XRE family.
       0.554
Sros_1744
Putative ABC transport system permease protein; KEGG: gbm:Gbem_0436 protein of unknown function DUF214.
  
     0.473
Sros_7149
Hypothetical protein.
  
     0.472
Sros_7941
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein; KEGG: hypothetical protein.
  
     0.456
Sros_3402
KEGG: hypothetical protein.
  
     0.421
Sros_0552
Hypothetical protein; KEGG: mrd:Mrad2831_5166 bifunctional DNA primase/polymerase.
  
     0.419
Sros_7973
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein; KEGG: bcm:Bcenmc03_6505 acyl-CoA ligase (AMP- forming), exosortase system type 1 associated.
  
     0.408
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.