STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_8199KEGG: dol:Dole_2118 AMP-dependent synthetase and ligase. (522 aa)    
Predicted Functional Partners:
Sros_8195
Dehydratase; KEGG: swi:Swit_3320 dehydratase.
 
   
 0.884
Sros_8196
KEGG: swi:Swit_3318 hypothetical protein.
 
    0.879
Sros_8198
KEGG: swi:Swit_3319 acyl-CoA dehydrogenase domain- containing protein.
 
  
 0.868
Sros_8197
KEGG: pha:PSHAa0888 acyl-CoA dehydrogenase protein.
 
  
 0.851
Sros_8194
KEGG: shl:Shal_2113 lipid-transfer protein.
 
 
 0.809
Sros_2421
KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
 
0.689
Sros_5582
KEGG: gdi:GDI2833 putative nonribosomal peptide synthetases (NPRS).
  
 
0.667
Sros_6838
Non-ribosomal peptide synthetase modules and related protein-like protein; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
 0.667
Sros_8815
Polyketide synthase modules and related protein- like protein; KEGG: xau:Xaut_1008 beta-ketoacyl synthase.
 
 0.656
Sros_8200
KEGG: xau:Xaut_1150 TetR family transcriptional regulator.
 
     0.591
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.