STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_8223Trans-hexaprenyltranstransferase; KEGG: reh:H16_A3253 trans- hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family. (326 aa)    
Predicted Functional Partners:
Sros_3828
Phytoene synthase; KEGG: sus:Acid_1266 farnesyl-diphosphate farnesyltransferase.
  
 0.931
Sros_0598
Trans-hexaprenyltranstransferase; KEGG: pde:Pden_2031 trans- hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
  
 
0.926
Sros_5159
KEGG: dvu:DVU3179 octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 
0.926
Sros_3714
Geranylgeranyl pyrophosphate synthase-like protein; KEGG: sfu:Sfum_1417 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 
0.923
Sros_2787
KEGG: mxa:MXAN_0894 putative farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
  
0.920
Sros_6906
Geranylgeranyl pyrophosphate synthase-like protein; KEGG: sfu:Sfum_1417 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 
0.919
menA
1,4-dihydroxy-2-naphthoateoctaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
    
 0.830
Sros_0075
KEGG: scl:sce1440 putative terpene cyclase.
     
 0.810
Sros_2336
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
  
 0.711
Sros_8524
Z-farnesyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
  
 0.573
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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