STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_8323Hypothetical protein; KEGG: tgr:Tgr7_1713 putative transmembrane anti- sigma factor. (88 aa)    
Predicted Functional Partners:
Sros_8324
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: scl:sce7566 ECF family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.985
Sros_9178
Conserved hypothetical protein.
 
    0.727
Sros_1156
KEGG: rpt:Rpal_2016 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.659
Sros_8322
KEGG: mxa:MXAN_3507 UDP-glucose 4-epimerase.
       0.655
Sros_8319
Response regulator receiver protein; KEGG: gsu:GSU1007 GAF domain/HD domain-containing protein.
 
     0.651
Sros_1967
KEGG: mxa:MXAN_1267 hypothetical protein.
  
     0.650
Sros_7983
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: scl:sce7566 ECF family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.631
Sros_9376
KEGG: ank:AnaeK_4061 thioredoxin reductase.
     
 0.611
Sros_8385
KEGG: hch:HCH_02851 molybdopterin/thiamine biosynthesis family protein.
  
    0.599
pafA
Hypothetical protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.
 
     0.581
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.