STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_8398KEGG: sil:SPO2448 MarC membrane protein. (203 aa)    
Predicted Functional Partners:
Sros_8399
Hypothetical protein; KEGG: bvi:Bcep1808_3402 BFD/(2Fe-2S)-binding domain- containing protein.
       0.673
Sros_8396
KEGG: mxa:MXAN_1877 hypothetical protein.
       0.534
Sros_8397
Zn-dependent hydrolase including glyoxylase- like protein; KEGG: glo:Glov_3342 beta-lactamase domain protein.
       0.502
Sros_8400
ADP-ribose pyrophosphatase-like protein; KEGG: aca:ACP_2902 hydrolase, NUDIX family; Belongs to the Nudix hydrolase family.
  
    0.482
Sros_6765
Hypothetical protein; KEGG: aba:Acid345_1854 thioesterase superfamily.
 
     0.406
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.