STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sros_8481Hypothetical protein; KEGG: trans-sialidase. (386 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.708
Sros_6403
Hypothetical protein; KEGG: GF21951 gene product from transcript GF21951- RA.
  
     0.675
Sros_8471
Hypothetical protein; KEGG: bpm:BURPS1710b_1102 putative lipoprotein.
  
     0.652
Sros_3197
KEGG: sus:Acid_4290 hypothetical protein.
  
     0.623
Sros_5968
KEGG: scl:sce1864 hypothetical protein.
  
     0.608
Sros_2292
KEGG: bpy:Bphyt_0955 hypothetical protein.
  
     0.603
Sros_7107
KEGG: hypothetical protein LOC686639.
  
     0.593
Sros_8182
KEGG: bja:blr0521 hypothetical protein.
  
     0.591
Sros_8472
KEGG: bsu:BSU04940 hypothetical protein.
  
     0.570
ispH-2
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.555
Your Current Organism:
Streptosporangium roseum
NCBI taxonomy Id: 479432
Other names: S. roseum DSM 43021, Streptosporangium roseum DSM 43021, Streptosporangium roseum str. DSM 43021, Streptosporangium roseum strain DSM 43021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.